publications

2009

Scientific papers in peer-reviewed journals

(NGC authors in bold)

  • Degenhardt T, Väisänen S, Rakhshandehroo M, Kersten S, Carlberg C.
    PPARa Controls Hepatic Heme Biosynthesis Through ALAS1. J Mol Biol. 2009 Mar 13.
  • Uwe Thissen, Suzan Wopereis, Sjoerd A. A. van den Berg, Ivana Bobeldijk, Robert Kleemann, Teake Kooistra, Ko Willems van Dijk, Ben van Ommen, Age K. Smilde.
    Improving the analysis of designed studies by combining statistical modelling with study design information. BMC Bioinformatics 2009, 10: 52
  • Bernini F, Freeman D, Groen A, Heeren J, Kalopissis A, Kronenberg F, Lindstedt K, Parini P, Schuster G, Tybjaerg Hansen A, Willems van Dijk K, von Eckardstein A.
    European Lipoprotein Club: report of the 31st ELC Annual Conference, Tutzing, 8-11 September 2008. Atherosclerosis. 2009. 205:41-7.
  • van Iterson M, 't Hoen PA, Pedotti P, Hooiveld GJ, den Dunnen JT, van Ommen B, Boer JM, Menezes RX.
    Relative power and sample size analysis on gene expression profiling data. BMC Genomics. 2009 Sep 17;10(1):439
  • van Schothorst EM, Flachs P, Franssen-van Hal NL, Kuda O, Bunschoten A, Molthoff J, Vink C, Hooiveld GJ, Kopecky J, Keijer J.
    Induction of lipid oxidation by polyunsaturated fatty acids of marine origin in small intestine of mice fed a high-fat diet. BMC Genomics. 2009 Mar 16;10:110.
  • van Baarlen P, Troost FJ, van Hemert S, van der Meer C, de Vos WM, de Groot PJ, Hooiveld GJ, Brummer RJ, Kleerebezem M.
    Differential NF-kappaB pathways induction by Lactobacillus plantarum in the duodenum of healthy humans correlating with immune tolerance. Proc Natl Acad Sci U S A. 2009 Feb 17;106(7):2371-6.
  • Wopereis S, Rubingh CM, van Erk MJ, Verheij ER, van Vliet T, Cnubben NH, Smilde AK, van der Greef J, van Ommen B, Hendriks HF.
    Metabolic profiling of the response to an oral glucose tolerance test detects subtle metabolic changes 2009. PLoS ONE, 4(2):e4525.
  • Henneman P, van der Sman-de Beer F, Moghaddam PH, Huijts P, Stalenhoef AF, Kastelein JJ, van Duijn CM, Havekes LM, Frants RR, Willems van Dijk K, Smelt AH.
    The expression of type III hyperlipoproteinemia: involvement of lipolysis genes. Eur J Hum Genet. 2009. 17:620-8
  • Voshol PJ, Rensen PC, Willems van Dijk K, Romijn JA, Havekes LM.
    Effect of plasma triglyceride metabolism on lipid storage in adipose tissue: Studies using genetically engineered mouse models. Biochim Biophys Acta. 2009. 1791:479-85.
  • Verschuren L, Kooistra T, Bernhagen J, Voshol PJ, Ouwens DM, van Erk M, de Vries-van der Weij J, Leng L, van Bockel JH, Willems van Dijk K, Fingerle-Rowson G, Bucala R, Kleemann R.
    MIF deficiency reduces chronic inflammation in white adipose tissue and impairs the development of insulin resistance, glucose intolerance, and associated atherosclerotic disease.
    Circ Res. 2009. 105:99-107.
  • Bijland S, van den Berg SA, Voshol PJ, van den Hoek AM, Princen HM, Havekes LM, Rensen PC, Willems van Dijk K.
    CETP does not affect triglyceride production or clearance in APOE*3-leiden mice. J Lipid Res. 2009 Jun 29. [Epub ahead of print]
  • Radonjic M, de Haan JR, van Erk MJ, Willems van Dijk K, van den Berg SA, de Groot PJ, Müller M, van Ommen B.
    Genome-wide mRNA expression analysis of hepatic adaptation to high-fat diets reveals switch from an inflammatory to steatotic transcriptional program. PLoS One. 2009 Aug 14;4(8):e6646.
  • Castagnini C, Luceri C, Toti S, Bigagli E, Caderni G, Femia AP, Giovannelli L, Lodovici M, Pitozzi V, Salvadori M, Messerini L, Martin R, Zoetendal EG, Gaj S, Eijssen L, Evelo CT, Renard CM, Baron A, Dolara P.
    Reduction of colonic inflammation in HLA-B27 transgenic rats by feeding Marie Ménard apples, rich in polyphenols. Br J Nutr. 2009 Jul 22:1-9. [Epub ahead of print]
  • Bragt MC, Plat J, Mensink M, Schrauwen P, Mensink RP.
    Anti-inflammatory effect of rosiglitazone is not reflected in expression of NFkappaB-related genes in peripheral blood mononuclear cells of patients with type 2 diabetes mellitus. BMC Endocr Disord. 2009 Feb 25;9:8.
  • Vrolix R, Mensink RP.
    Variability of the glycemic response to single food products in healthy subjects. Contemp Clin Trials. 2009 Sep 6. [Epub ahead of print]
  • Hommelberg PP, Plat J, Langen RC, Schols AM, Mensink RP.
    Fatty acid-induced NF-kappaB activation and insulin resistance in skeletal muscle are chain length dependent. Am J Physiol Endocrinol Metab. 2009; 296:E114-20.
  • Timmers S, de Vogel-van den Bosch J, Towler MC, Schaart G, Moonen-Kornips E, Mensink RP, Hesselink MK, Hardie DG, Schrauwen P.
    Prevention of high-fat diet-induced muscular lipid accumulation in rats by alpha lipoic acid is not mediated by AMPK activation. J Lipid Res. 2009 Aug 18. [Epub ahead of print]
  • Volman JJ, Mensink RP, Buurman WA, Onning G, Plat J.
    The absence of functional dectin-1 on enterocytes may serve to prevent intestinal damage. Eur J Gastroenterol Hepatol. 2009 Aug 28. [Epub ahead of print]
  • Dullens SP, Mensink RP, Mariman EC, Plat J.
    Differentiated CaCo-2 cells as an in-vitro model to evaluate de-novo apolipoprotein A-I production in the small intestine. Eur J Gastroenterol Hepatol. 2009; 21:642-9.
  • Theuwissen E, Plat J, Mensink RP.
    Consumption of oat ß-glucan with or without plant stanols did not influence inflammatory markers in hypercholesterolemic subjects. Molecular Nutrition & Food Research 2009; 53:370-6.
  • Mariman EC.
    2DE-proteomics meta-data indicate the existence of distinct cellular stress-responsive mechanisms. Expert Rev Proteomics. 2009 Aug;6(4):337-9.
  • Wang P, Bouwman FG, Mariman EC.
    Generally detected proteins in comparative proteomics--a matter of cellular stress response? Proteomics. 2009 Jun;9(11):2955-66.
  • Crosley LK, Duthie SJ, Polley AC, Bouwman FG, Heim C, Mulholland F, Horgan G, Johnson IT, Mariman EC, Elliott RM, Daniel H, de Roos B.
    Variation in protein levels obtained from human blood cells and biofluids for platelet, peripheral blood mononuclear cell, plasma, urine and saliva proteomics. Genes Nutr. 2009 Jun;4(2):95-102.
  • Heidema AG, Thissen U, Boer JM, Bouwman FG, Feskens EJ, Mariman EC.
    The association of 83 plasma proteins with CHD mortality, BMI, HDL-, and total-cholesterol in men: applying multivariate statistics to identify proteins with prognostic value and biological relevance. J Proteome Res. 2009 Jun;8(6):2640-9.
  • Augustin Scalbert, Lorraine Brennan, Oliver Fiehn, Thomas Hankemeier, Bruce S. Kristal, Ben van Ommen, Estelle Pujos, Elwin Verheij, David Wishart and Suzan Wopereis -
    Mass-spectrometry-based metabolomics in nutrition – Current limitations and recommendations – Metabolomics 2009, DOI 10.1007/s11306-009-0168-0
  • Marijana Radonjić, Marjan van Erk, Heleen Wortelboer, Wilrike Pasman, Henk Hendriks, Ben van Ommen.
    Effect of body fat distribution on the transcription response to a dietary fat intervention - Genes and Nutrition 2009 DOI 10.1007/s12263-009-0122-9.
  • Ulrich Harttig, Anthony J. Travis, Philippe Rocca-Serra, Marten Renkema, Jolande Boer, Ben van Ommen and Heiner Boeing
    Data exchange and data integration in nutrigenomic collaborations – The NuGO information network. – Genes and Nutrition 2009 DOI 10.1007/s12263-009-0123-8.
  • Ben van Ommen, Jaap Keijer, Sandra Heil and Jim Kapu.
    Challenging homeostasis to define biomarkers for individual nutrition related health – Molecular Nutrition and Food Research 2009 795-804 53 DOI 10.1002/mnfr.200800390.
  • I. Bobeldijk, S. Wopereis, C. Rubingh, F. van der Kloet, H. Hendriks, E. Verheij and B. van Ommen.
    Metabolomics in human nutrition studies. 2009 In: Design of human studies, Wageningen Academic Publishers, the Netherlands.
  • Leon Coulier, Suzan Wopereis, Henk Hendriks, Marijana Radonjic and Renger Jellema.
    Applied chemometrics in systems biology and nutritional metabolomics. Applications: systems biology. 2009. In: Comprehensive chemometrics. volume 4, pp. 279-312 Oxford: Elsevier
  • Giebeler A, Boekschoten MV, Klein C, Borowiak M, Birchmeier C, Gassler N, Wasmuth HE, Müller M, Trautwein C, Streetz KL.
    c-Met confers protection against chronic liver tissue damage and fibrosis progression after bile-duct-ligation in mice. Gastroenterology. 2009; 137: 297-308
  • Kersten S, Lichtenstein L, Steenbergen E, Mudde K, Hendriks HF, Hesselink MK, Schrauwen P, Müller M.
    Caloric Restriction and Exercise Increase Plasma ANGPTL4 Levels in Humans via Elevated Free Fatty Acids. Arterioscler Thromb Vasc Biol. 2009 Jun; 29:969-74
  • Bouwens M, van de Rest O, Dellschaft N, Bromhaar MG, de Groot LC, Geleijnse JM, Müller M, Afman LA.
    Fish-oil supplementation induces antiinflammatory gene expression profiles in human blood mononuclear cells. Am J Clin Nutr. 2009 Aug; 90:415-24
  • Kersten S, Müller M.
    Dropping liver fat droplets. Hepatology 2009 Aug;50(2):645-7
  • Biesalski HK, Dragsted LO, Elmadfa I, Grossklaus R, Müller M, Schrenk D, Walter P, Weber P.
    Bioactive compounds: Definition and assessment of activity. Nutrition. 2009 Aug 18
  • Rakhshandehroo M, Hooiveld G, Müller M, Kersten S.
    Comparative analysis of gene regulation by the transcription factor PPARalpha between mouse and human Plos ONE 2009 Aug 27;4(8):e6796.
  • Afman L and Müller M.
    Transcriptomics applications in human nutrigenomics studies pp 15-20; In “Design of human nutrigenomics studies” edited by: Sian Astley and Linda Penn 2009, 104 pages. Wageningen Academic Publishers ISBN: 978-90-8686-094-4.